PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.285170.1
Common NameCsa_5G605000, LOC101206263
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 368aa    MW: 39002.1 Da    PI: 9.4586
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.285170.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.15.4e-41672372134
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                     ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++       
  Cucsa.285170.1  67 PPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTISAPshlrtsy 161
                     789******************************************************************99987777777777555556677778 PP

             TCP  89 ....................kaaksaakskksqksaasalnlakesr...........................akarararertrekmrikn 134
                                         +                 ++nl ++s+                           +k r+++ e+++e+ + ++
  Cucsa.285170.1 162 fsptqfavrtrsdlwdrtnnH-----------------NHNLVDDSStflnfnssnyvnvfkqdqggidvvetgKKRRSEQSESSSENYMVQT 237
                     876655444444433322220.................2333333333444444445666666667888888878888888888887777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.1E-4072204IPR005333Transcription factor, TCP
PROSITE profilePS5136927.92373127IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MIMDGENGIR RPNFPLQLLE KKKEEEEEQQ QHPCSSSANN GGTKTTTTIT TTPNSNLQSS  60
SSPKKPPPKR ATTKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA  120
EPAVIAATGT GTIPANFTSL NISLRSSGST ISAPSHLRTS YFSPTQFAVR TRSDLWDRTN  180
NHNHNLVDDS STFLNFNSSN YVNVFKQDQG GIDVVETGKK RRSEQSESSS ENYMVQTSTG  240
SIPASQSSQL PATFWMVTNP TNQGSDQMWT FPSVGNSSML RGAGGGGGGG GGGGFHFMNL  300
PPPMALLPSG QQLGTGIGGG GGGPATDSHL GMLAALSAYR TTMPGLSVSE SPTRGVGGVT  360
SNNPDQS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655678.10.0PREDICTED: transcription factor TCP15
TrEMBLA0A0A0KVX20.0A0A0A0KVX2_CUCSA; Uncharacterized protein
STRINGXP_004173627.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-48TCP family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]