PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.283930.1
Common NameCsa_5G608320, LOC105435582
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 324aa    MW: 37067.2 Da    PI: 9.8209
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.283930.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.41.7e-40862083131
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec.eaesssssasnsssgkaaks 93 
                     +kkdrhski+T++g+RdRR+Rls+e+a+ fFdLqd+LGfdk+skt+eWL++++  aike  +    +++s+s+c ++ + + +          k+
  Cucsa.283930.1  86 KKKDRHSKICTSKGPRDRRMRLSLEIARNFFDLQDMLGFDKASKTVEWLFTKSRSAIKEVKEKylsEAKSKSSCySSTDLVTNL--------YKE 172
                     79*************************************************************776555556663333333333........344 PP

             TCP  94 aakskksqksaasalnlakesrakarararertrekmr 131
                       +s k++++    + ++kesr karararertr k  
  Cucsa.283930.1 173 VLPSGKKRRRRL--RIVDKESRYKARARARERTRAKSI 208
                     445555555555..88999***************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.7E-3586208IPR005333Transcription factor, TCP
PROSITE profilePS5136935.4187145IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.075189206IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MSRLFEQQIH PPSLQLIDCS NYNYNNNYFN PFLDDHQEFI LGHILYSQKH QLLANNSDQI  60
GVIETKTDHS SQKIPISRKR SSSVMKKKDR HSKICTSKGP RDRRMRLSLE IARNFFDLQD  120
MLGFDKASKT VEWLFTKSRS AIKEVKEKYL SEAKSKSSCY SSTDLVTNLY KEVLPSGKKR  180
RRRLRIVDKE SRYKARARAR ERTRAKSIQR GLEVSKSNLE GNPDGVRKMG DFSEEISGNK  240
RKTSTHVSLC ENEKVLGSEE KNSDSLIMDK RVSKEICSDE IHLLPDSSMD MPTLSLDTMK  300
ASSAGLKLLE LDEVDGVLIF YGE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182KKRRRR
2178183KRRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655757.10.0PREDICTED: transcription factor TCP18-like
TrEMBLA0A0A0KT450.0A0A0A0KT45_CUCSA; Uncharacterized protein
STRINGXP_008446552.11e-159(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.15e-28TCP domain protein 12
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]