PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.283560.1
Common NameCsa_5G609680
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 182aa    MW: 19782.7 Da    PI: 8.3568
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.283560.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.61.9e-284105197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C++lr++C++dC+++p++      ++q++++ +++k++G++ + +l++a+ ++ r+++++sl+yeA+ r+ +PvyG+vg++ ++ ++ +q+
  Cucsa.283560.1   4 SCNGCRILRKGCSDDCIIRPCLqwipsSDSQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQA 98 
                     6*********************99954446789************************************************************** PP

          DUF260  91 kaelall 97 
                     +++++l 
  Cucsa.283560.1  99 AVDAVLN 105
                     9998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.4253109IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MRMSCNGCRI LRKGCSDDCI IRPCLQWIPS SDSQANATIF LAKFYGRAGL FNLITAAAQH  60
LRPAIFKSLL YEACGRMVNP VYGSVGLLCS GDWERCQAAV DAVLNGSMNV EPDTPPSNNG  120
NLSLKCCDIR HVCNEPNLAA SGDLLKVKGR SRFKKPDHRT KPKPGPDHDL GIGSSFDEAG  180
RD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818961e-172LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132641e-172LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135401.11e-134PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9ZW961e-60LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A0A0KUI01e-131A0A0A0KUI0_CUCSA; Uncharacterized protein
STRINGXP_004164162.11e-133(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.15e-63LOB domain-containing protein 40
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]