PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.280880.1
Common NameCsa_5G577450, LOC105435697
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 250aa    MW: 29186.3 Da    PI: 10.035
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.280880.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.44.1e-41872272128
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssaseceaesssssasnsssg.. 88 
                      gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWLl +++ aik+l +       +      + ++s+++s+ n+++g  
  Cucsa.280880.1  87 RGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQAyffkysN------SGQSSEVVSEINDNNGvf 175
                     68**************************************************************6654441......444455555555555555 PP

             TCP  89 ............kaaksaakskksqksaasalnlakesrakarararertre 128
                                 ++  + + + k++ ++ + + +a+e r +ararar+rt  
  Cucsa.280880.1 176 nvaasnlyqeqdQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLL 227
                     5556666677533333333455555555566777779999999999999865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.4E-4088229IPR005333Transcription factor, TCP
PROSITE profilePS5136935.48789147IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDDHQQQQHQ EDQILINSYD DHDFHYFPHP FLDDDDLFLS HFLSQQQQFF EQRDQQLDET  60
TKKMKKKKKL CGSSSSRKNG SNSTKRRGKK DRHSKIYTAQ GPRDRRMRLS LQIARKFFDL  120
QDMLGFDKAS KTIEWLLLNS NSAIKDLKQA YFFKYSNSGQ SSEVVSEIND NNGVFNVAAS  180
NLYQEQDQED VAFTGGFKDK IKSRTLRTVA REARDRARAR ARQRTLLKNT LLPNPPITSS  240
ISQHFDHLSX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213223RDRARARARQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656248.10.0PREDICTED: transcription factor TCP12
TrEMBLA0A0A0KRR20.0A0A0A0KRR2_CUCSA; Uncharacterized protein
STRINGXP_008437699.11e-131(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-29TCP domain protein 12
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]