PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.259870.1
Common NameCsa_3G117400, LOC101219767
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 370aa    MW: 41827.9 Da    PI: 5.6701
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.259870.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00079426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC+ C +sFs+   L  H+r+H
  Cucsa.259870.1  4 HKCKLCFRSFSNGRALGGHMRSH 26
                    79********************9 PP

2zf-C2H213.60.00021238260123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k+F++   L  H  +H
  Cucsa.259870.1 238 YKCETCNKVFRSYQALGGHRASH 260
                     9***********99999998887 PP

3zf-C2H211.40.001295317123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C ++Fs+   L  H r+H
  Cucsa.259870.1 295 HECPVCFRVFSSGQALGGHKRSH 317
                     79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.5E-6327IPR007087Zinc finger, C2H2
SuperFamilySSF576679.48E-5330No hitNo description
SMARTSM003550.065426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576672.25E-7238260No hitNo description
SMARTSM003550.012238260IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429238265IPR007087Zinc finger, C2H2
PfamPF139127.0E-12238262IPR007087Zinc finger, C2H2
PROSITE patternPS000280240260IPR007087Zinc finger, C2H2
SuperFamilySSF576672.25E-7290317No hitNo description
SMARTSM003550.19295317IPR015880Zinc finger, C2H2-like
PfamPF139124.8E-11295317IPR007087Zinc finger, C2H2
PROSITE profilePS501579.224295317IPR007087Zinc finger, C2H2
PROSITE patternPS000280297317IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDRHKCKLCF RSFSNGRALG GHMRSHMLNL PLPPKGEEDA APPHPHLSED GDSASFLSSP  60
SSSEGDAEEK GVSYGLRENP KRSIRVVDPE FSFAVDAASV VLQDRESETE SSKNPTRRRS  120
KRTRKPDRRH HHHLHHHYNV FKRLQEKKMN HPESWTEAEP VSSISGSTTE EDVAFWLMML  180
SRDKWTKQQG GYEEEEDEED EDEDEDEEEE EEELEESMEE TDDSEAVKFP KNRNRGNYKC  240
ETCNKVFRSY QALGGHRASH KKIKVSLTYN NPQLGSHHEN AATPSSGSMA ERKIHECPVC  300
FRVFSSGQAL GGHKRSHVTG YSNPPKAAQK KFPDSLIDLN LPAPFEEDDV SQIELSAVSD  360
ADFVNAIRQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650633.10.0PREDICTED: zinc finger protein ZAT1
TrEMBLA0A0A0L5N50.0A0A0A0L5N5_CUCSA; Uncharacterized protein
STRINGXP_008437783.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-55C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]