PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.257700.1
Common NameCsa_3G126090, LOC101216934
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 232aa    MW: 24957.7 Da    PI: 8.7511
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.257700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.16.9e-3924123199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC ++C++apyf +eq + +fa+vhk+FGasnv+k+l ++pe++r da+ +++yeA+ar+r+Pv G+v++i++lqqq ++l+ e+
  Cucsa.257700.1  24 PCGACKFLRRKCMPECIFAPYFDSEQgSTHFAAVHKVFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEI 118
                     7***********************9988******************************************************************* PP

          DUF260  95 allke 99 
                     ++l++
  Cucsa.257700.1 119 SYLQA 123
                     99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.84723125IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3724122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSSRRSGGSC TKGKGGGSNG SGGPCGACKF LRRKCMPECI FAPYFDSEQG STHFAAVHKV  60
FGASNVSKML LHIPEHKRLD AAITICYEAQ ARVREPVLGC VSHIFALQQQ AARLQIEISY  120
LQAYLATSEL PRSAPHLQAQ PPALVKKPTL SSIISLPSDC PSFPAESDLS LLLDPVEQVS  180
QEKLQSPLES YQIGSNNFPS MGSIDQQVVQ KQLSSMQRIG ASLFPNIPKR A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132601e-171LN713260.1 Cucumis melo genomic chromosome, chr_6.
GenBankLN6818481e-171LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134346.11e-169PREDICTED: LOB domain-containing protein 18
SwissprotO221315e-57LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0A0L4D41e-169A0A0A0L4D4_CUCSA; Uncharacterized protein
STRINGGLYMA01G34540.13e-63(Glycine max)
STRINGGLYMA03G02620.13e-63(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.12e-58LOB domain-containing protein 18
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]