PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.255330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 151aa    MW: 16783.6 Da    PI: 9.8644
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.255330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-191970256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr+++ +g+++AeIrdps+ng  +r +lg++ tae+Aa+a+++ + +l+g+
  Cucsa.255330.1 19 KYRGVRRRP-WGKYAAEIRDPSKNG--ARQWLGTYETAEDAARAYDQRAFQLKGH 70
                    8********.***********9998..********************99999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-301978IPR001471AP2/ERF domain
PROSITE profilePS5103223.3671977IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-221978IPR016177DNA-binding domain
CDDcd000184.21E-271977No hitNo description
SMARTSM003803.1E-321983IPR001471AP2/ERF domain
PfamPF008472.1E-121970IPR001471AP2/ERF domain
PRINTSPR003671.8E-102031IPR001471AP2/ERF domain
PRINTSPR003671.8E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MEDHRKGKEQ QKHGDDGIKY RGVRRRPWGK YAAEIRDPSK NGARQWLGTY ETAEDAARAY  60
DQRAFQLKGH LASLNFPSEY YARVMGSPPH PPNLFSSTSI NSGFDSGGVG GGSSTSNIDP  120
HKVIVFEYVD GRVLEDLLAQ EDKKKKKNSK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-271777363ATERF1
3gcc_A8e-271777363ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134412.11e-109PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC54e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0A0L4F11e-93A0A0A0L4F1_CUCSA; Uncharacterized protein
STRINGXP_004173660.11e-108(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-40ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]