PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.254620.1
Common NameCsa_3G146290, LOC101218269
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 364aa    MW: 42588.4 Da    PI: 5.5708
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.254620.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91e-35401322103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+yei+ed  +++++sws+ +nsfvv+d+++f+ ++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+h+ F +g+k+ll+ 
  Cucsa.254620.1  40 FLTKTYEIIEDIGTNHIVSWSRGNNSFVVWDPQSFSLTLLPKYFKHSNFSSFVRQLNTYGFRKVDPDK---------WEFAHEGFLRGQKHLLKL 125
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k +
  Cucsa.254620.1 126 IRRRKAS 132
                     ****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-3833123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-5936129IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.98E-3436129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-3040129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-184063IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-1891103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MNRPGRRVKE EIPASSSSGT TTAASPQPME GLHEAGPPPF LTKTYEIIED IGTNHIVSWS  60
RGNNSFVVWD PQSFSLTLLP KYFKHSNFSS FVRQLNTYGF RKVDPDKWEF AHEGFLRGQK  120
HLLKLIRRRK ASQPNASHQA PDSCVEVGRF GLDGEVDRLQ RDKQVLMAEV VKLRQQQQNT  180
KTYLQTMERR LKKTETKQQL MMNFLARAIQ NPDFIQQLIH QKDKHKELEE TINRKRRRHI  240
DQGQPDFEDE EEKEDDYDHL PPFINDDIEM DVDLLPIGDE EHLMKYHVPK KEIMDENCER  300
NVDNIEDLNE GFWENLLNEA NEEDHYGFGT HGFKEQQDYK DEDHHGNNEL VDHFAFFTSN  360
NLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-243513212123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233237RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134433.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-119HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0A0L5E20.0A0A0A0L5E2_CUCSA; Uncharacterized protein
STRINGPOPTR_0010s09210.11e-127(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-116heat shock transcription factor A6B
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]