PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.251110.1
Common NameCsa_3G179190, LOC101211292
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 279aa    MW: 29341.4 Da    PI: 10.554
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.251110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1151e-3517121368
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................ 65 
                       k++++++hTkv+gR+RR+R++a caar+F+L++eL +++d++ti WLl+ a+pai+e+tgt                                
  Cucsa.251110.1  17 QTKRPSKDRHTKVEGRGRRIRMPAACAARIFQLTRELDHKSDGETIRWLLEHAEPAIIEATGTgtvpaiavsvggtlkipttsparpngeiseap 111
                     5799***********************************************************55555555555555444222222222222222 PP

             TCP  66 .......sss 68 
                            ++s
  Cucsa.251110.1 112 rkrrrkgTNS 121
                     2222221111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-2822105IPR005333Transcription factor, TCP
PROSITE profilePS5136926.5452276IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MPPLTLSQVP STTLAKQTKR PSKDRHTKVE GRGRRIRMPA ACAARIFQLT RELDHKSDGE  60
TIRWLLEHAE PAIIEATGTG TVPAIAVSVG GTLKIPTTSP ARPNGEISEA PRKRRRKGTN  120
SESNDCNDQA SVSSGLTPIA PMAAYGAGLV PFWGSAGGVT EPFFMVPGTS NNHQPQLWAV  180
PARPLSNLVS SMNPGLQFGG VVPVLTRAVS NGSSGLESGS SPAMVSASLI PGTVSAPAST  240
SGSTQMLRDF SLEIYEKKEL EFMGRRSPAK SQTPCSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111115RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150306.10.0PREDICTED: transcription factor TCP19
SwissprotQ9LT891e-62TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A0A0L8J70.0A0A0A0L8J7_CUCSA; Uncharacterized protein
STRINGXP_004150306.10.0(Cucumis sativus)
STRINGXP_004170748.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.22e-63TCP family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]