PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.238090.1
Common NameCsa_5G644520, LOC105435716
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 396aa    MW: 44721 Da    PI: 8.3921
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.238090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP147.87.6e-461202713135
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec......eaesss 79 
                     +kkdrhski+T++g+RdRRvRls+++ ++fFdLqd+LG+dk+skt++WLl+++ +aikelt+             ssss+s++      e+ +  
  Cucsa.238090.1 120 VKKDRHSKIYTAQGLRDRRVRLSIDISRKFFDLQDMLGYDKASKTLDWLLTKSRKAIKELTKKtqyhnnnnniitSSSSSSKFhfdhdfEECEVI 214
                     79*************************************************************66666666655422222222233333444444 PP

             TCP  80 ssasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmriknk 135
                     s+++ ++++++      +s++ +k+   +  lakesrakarararert+ekm ++++
  Cucsa.238090.1 215 SNDDDDEEAEKIIMLGkSSSNCKKNLGFHDVLAKESRAKARARARERTKEKMIMNQQ 271
                     4444444444444444366666666677788899*******************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.3E-44120268IPR005333Transcription factor, TCP
PROSITE profilePS5136935.65121179IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.537248265IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MFSSTNNLHL FPLQQYFPSS SSSSPSYHHH LVAPPPSPPP HHHHSEPVYI GPLQDPVLSG  60
VVAPIFLQVQ EEDRDQARMK NEQQEVAVLM SQNGNNNNNN NGQCFSSSTT LNNFTKKGSV  120
KKDRHSKIYT AQGLRDRRVR LSIDISRKFF DLQDMLGYDK ASKTLDWLLT KSRKAIKELT  180
KKTQYHNNNN NIITSSSSSS KFHFDHDFEE CEVISNDDDD EEAEKIIMLG KSSSNCKKNL  240
GFHDVLAKES RAKARARARE RTKEKMIMNQ QFRSPPPPPP QPSMPTPVVQ KAAGPDQENN  300
NIIGIMWKPS PMVTSSSSYQ KNLVISKGES CNYNNYCNNF YFPASNLTPN WDINIDSTFA  360
RPQSGFCSIA NMDSLPEFQV CAKPWDSCNN NQHLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-14126179154Putative transcription factor PCF6
5zkt_B2e-14126179154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0093030.0LC009303.1 Cucumis melo CmTCP1 gene for TCP transcription factor, complete cds, cultivar: Fuyukei 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656282.10.0PREDICTED: transcription factor DICHOTOMA-like
TrEMBLA0A0A0KSL10.0A0A0A0KSL1_CUCSA; Uncharacterized protein
STRINGXP_008459708.11e-177(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.25e-29TCP family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]