PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.199060.1
Common NameCsa_1G023060, LOC101219232
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 245aa    MW: 26726.7 Da    PI: 8.1577
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.199060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.21.3e-284107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl++eA+ r+ +P+ G++g+++++++ql+q 
  Cucsa.199060.1   4 SCNGCRVLRKGCSESCSIRPCLqwiksPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQD 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l ++
  Cucsa.199060.1  99 AVEAVLKGA 107
                     **9988766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.9733109IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-224102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKS PQSQANATFF LAKFYGRAGL VNLINAGPDH  60
LRPAIFKSLL FEACGRIVNP IFGSAGLLWS GSWQLCQDAV EAVLKGAPIL PVSSETAASH  120
MGPPLKGCDI RHVSKQQDSA SGSAVRKIKT RRRFKRSGTA KLKPKEEPSV VVVPEFKFDD  180
QTQIVSEPQC LKFELDNWKG RESPEKDCGS DDTECLSVET VEGCQGGDVE LELTLGFGQS  240
WMLT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138241.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8865e-83LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0A0LPS51e-179A0A0A0LPS5_CUCSA; Uncharacterized protein
STRINGXP_004154919.11e-180(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-84LOB domain-containing protein 41
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]