PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.198700.1
Common NameCsa_1G015755, LOC101221985
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 144aa    MW: 16897.8 Da    PI: 11.9748
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.198700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.4e-152169355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + GVr+++ +grWvAeI++ s   ++ r +lg+f  ae+Aa a+++a++ l+g
  Cucsa.198700.1 21 FLGVRQRP-SGRWVAEIKVSS---QKLRLWLGTFNRAEDAAMAYDRAARLLRG 69
                    67******.7*********42...36***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.44E-272076No hitNo description
PROSITE profilePS5103218.5972077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-272077IPR001471AP2/ERF domain
SMARTSM003801.7E-312083IPR001471AP2/ERF domain
PRINTSPR003671.1E-62132IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-192179IPR016177DNA-binding domain
PfamPF008475.0E-92369IPR001471AP2/ERF domain
PRINTSPR003671.1E-64359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MATNSSSLPP NQEINHGRRR FLGVRQRPSG RWVAEIKVSS QKLRLWLGTF NRAEDAAMAY  60
DRAARLLRGR SAKTNFSYDY HHGFFNSTIN QEQTPSLFEH SPKLCRLLQH ALMKNRSRLI  120
STTDHQYHHR RRHQQQQISR NNGX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1316831278Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138335.11e-104PREDICTED: ethylene-responsive transcription factor ERF086-like
TrEMBLA0A0A0LPP41e-102A0A0A0LPP4_CUCSA; Uncharacterized protein
STRINGXP_004155038.11e-103(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-14related to AP2 11
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]