PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.182170.1
Common NameCsa_1G570150, LOC101209664
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YC
Protein Properties Length: 260aa    MW: 28699.5 Da    PI: 6.3411
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.182170.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.61.2e-55811841101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw +q   iek+tdfknh+lPlarikki+kadedv+misaeaPvl+++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl
  Cucsa.182170.1  81 QLQTFWVNQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 175
                     89*****999999********************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdivpr++l
  Cucsa.182170.1 176 VDIVPREDL 184
                     ******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.2E-3369175IPR009072Histone-fold
PfamPF008087.1E-22103166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.2E-38104181IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDQQGHGQPP SMGAVGSGGQ IAYGSNLYHP NQMSVGPTSG SVVTSVGGIQ STSQPGGAQL  60
AQHQLAYQHI HQQQQQQLQQ QLQTFWVNQY QEIEKVTDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVLF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP  180
REDLKDEVLT SIPRGSMTVG GPGDTLPYYM PSQHAPQVGA PGMIMGKPVM DPAMYAPQSH  240
PYMAPQMWQH AQDQAPPDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C2e-41671814119HapE
4g91_C2e-41671814119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659897.10.0PREDICTED: nuclear transcription factor Y subunit C-9
RefseqXP_011659898.10.0PREDICTED: nuclear transcription factor Y subunit C-9
SwissprotQ8L4B22e-86NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A0A0LW220.0A0A0A0LW22_CUCSA; Uncharacterized protein
STRINGVIT_14s0128g00250.t011e-137(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.46e-81nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]