PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.168370.1
Common NameCsa_2G224260, WRKY10, WRKY9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 185aa    MW: 20490.3 Da    PI: 10.3844
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.168370.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.3e-32117176260
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                     +D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+k
  Cucsa.168370.1 117 SDDYSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERCLEDPSMLIVTYEGEHNHPK 176
                     69************************9988****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.1E-1774114IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.6E-35104176IPR003657WRKY domain
PROSITE profilePS5081130.986111177IPR003657WRKY domain
SuperFamilySSF1182902.62E-28114176IPR003657WRKY domain
SMARTSM007747.8E-39116176IPR003657WRKY domain
PfamPF031066.7E-28118175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MKHQAEMMFL RNNNGMNLNF DTSNCTLTMS SARSFISSLS MDGSVIGDRS SFHLIGPSTT  60
TTTTSGNSKR KFSARGEEGS LKCGSTSKCH CSKKRKHRVK RSIKVPAISN KLADIPSDDY  120
SWRKYGQKPI KGSPHPRGYY KCSSIRGCPA RKHVERCLED PSMLIVTYEG EHNHPKMSTQ  180
SAHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22109174771WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840120.0GU984012.1 Cucumis sativus WRKY protein (WRKY9) mRNA, complete cds.
GenBankGU9840130.0GU984013.1 Cucumis sativus WRKY protein (WRKY10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004154104.11e-134PREDICTED: probable WRKY transcription factor 21 isoform X1
SwissprotO043363e-87WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLE7CEW11e-133E7CEW1_CUCSA; WRKY protein
STRINGXP_004145381.11e-134(Cucumis sativus)
STRINGXP_004167211.11e-134(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.15e-88WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Ling J, et al.
    Genome-wide analysis of WRKY gene family in Cucumis sativus.
    BMC Genomics, 2011. 12: p. 471
    [PMID:21955985]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]