PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.161230.1
Common NameCsa_2G373510
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 148aa    MW: 16591.9 Da    PI: 7.809
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.161230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.5e-3951041100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C+++C+++pyfp+++p++fa+vh+++Gasnv k+l+++p + r +a+++l++eA++r++dP+yG+vg+i++lq +l+ ++++la
  Cucsa.161230.1   5 RCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLA 99 
                     6********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  Cucsa.161230.1 100 KTRAE 104
                     99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.54105IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-395102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MIPSRCAACK YLRRRCSSNC IFSPYFPSNN PQRFAIVHRI YGASNVAKFL QQVPMDLRGE  60
AAETLYFEAK CRIEDPIYGC VGIISQLQYE LHVAETQLAK TRAEIALLAS NRQQAQHEDF  120
PFDDPSSGPI FTGLSTPAHF SEQLFRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-33610512111LOB family transfactor Ramosa2.1
5ly0_B2e-33610512111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-106LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-106LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023522202.18e-74LOB domain-containing protein 24-like
SwissprotP594683e-52LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A0A0LLX61e-105A0A0A0LLX6_CUCSA; Uncharacterized protein
STRINGXP_004162991.11e-106(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36973066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.11e-54LOB domain-containing protein 24
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]