PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.156040.1
Common NameCsa_3G598900, LOC105434921
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 529aa    MW: 57681.8 Da    PI: 6.2897
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.156040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11344386754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Cucsa.156040.1 344 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 386
                     79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16340405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9343386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15344399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.56E-13344390No hitNo description
PROSITE profilePS516719.415456528IPR002912ACT domain
CDDcd048732.77E-7457517No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MLPKSTGILW LDGDHEDATS WITTTNHDNH HSLPVPPAPS ISSFKSILQS DCYINSSTPL  60
NPSHQDFHSL SSHPHIPDLP FSSNPSDNFL LHPLDSSSSC SPSHAFPLHP SHSNSILPSH  120
KSSCFSSLLN VVCGSSFDNA FDLGGENGLL GSYQGNQALM GFTGISSLPQ IATQELTLNN  180
SDFHVPDNPP AFGAGFNSAA AFENFDACGN ALFQNRSKVL RPLEVFPEVG AQPTLFQKRA  240
AHRVGSGGAD KLENLEVSGF KLEEGPMWTP NLERLRKMNG DEDIEDGSVD VSRFNYDSDE  300
PIEYNKQEDN VNAKNCGSNS NANSTITGGD QKGKKKGLPA KNLMAERRRR KKLNDRLYML  360
RSVVPKISKM DRASILGDAI DYLKELLQRI NDLHKELEST PPGSVLQPSA SFHPLTPTLP  420
TLPCRVKEEL CPSNLSSPNT QPARVEVRVR EGRAVNIHMF CSRKPGLLLS TMRALDNLGL  480
DIQQAVISCF NGFALDVFRA EQSKEGQEML PEQIKAVLLD SAGLHGVV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333351KKKGLPAKNLMAERRRRKK
2345352ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
GenBankLN6818570.0LN681857.1 Cucumis melo genomic scaffold, anchoredscaffold00023.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651587.10.0PREDICTED: transcription factor ICE1
SwissprotQ9LSE21e-145ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0A0LBB40.0A0A0A0LBB4_CUCSA; Uncharacterized protein
STRINGVIT_14s0068g01200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-124bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]