PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.134750.1
Common NameCsa_1G051760, LOC101206422
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 514aa    MW: 56094.9 Da    PI: 6.0786
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.134750.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11329371754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Cucsa.134750.1 329 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 371
                     79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16325387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9328371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-12329375No hitNo description
Gene3DG3DSA:4.10.280.101.5E-15329383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048737.55E-8442502No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MLSRVGNVLW MENRDDEDSS SWTKNNTDHN HLNHPVNCSV LNNKDEITSL STFKSMLEVE  60
DDWYSSSSCS PSSSVFNNID PSQLRFFLPP TRTLSSLHKV VSNNPLDHGF DLGAEVGFLD  120
VQASNASTLL NDGGGLLTGF TDLSPTSQMN TPSLCLGSQL TAQNVAPMSD NCSGLAGFQS  180
FDENLGNALL LNRSKLLRPL ESFPSVGAQP TLFQKRAALR KSLADKGSSL GVLSPDGGWF  240
SNRIEGGIGK NEMGEENGKK RKMVYADELQ DTSIDTSRFN YDSDDFTENT NTKLDESGRN  300
VGNTSNANST VTGGDQKGKK KGLPAKNLMA ERRRRKKLND RLYMLRSVVP KISKMDRASI  360
LGDAIEYLKE LLQRINDLHN ELEFSPSGAA LTPGASFHPL TPTPPSLSSR IKEELCPTSF  420
PSPNGQPARV EVRVREGRAV NIHMFCGRRP GLLLSTVRAL DNLGLDIQQA VISCFNGFAM  480
DIFRAEQCSE GQDVHPEQIK AILLDSVGFN SAT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318336KKKGLPAKNLMAERRRRKK
2330337ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004154005.10.0PREDICTED: transcription factor ICE1-like isoform X1
SwissprotQ9LSE21e-129ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0A0LTY10.0A0A0A0LTY1_CUCSA; Uncharacterized protein
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-101bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]