PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.132590.1
Common NameCsa_2G008740, LOC101203718
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 700aa    MW: 76945.7 Da    PI: 5.7786
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.132590.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.92.5e-24210266155
         G2-like   1 kprlrW...tpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W    ++LH++Fv av+ L G ekA+Pk+il+lm+v+gLt+e+v+SHLQkYR 
  Cucsa.132590.1 210 KPRVNWydgDENLHRKFVAAVNIL-GYEKAVPKKILDLMNVEGLTRENVASHLQKYRQ 266
                     789999444479************.********************************6 PP

2Response_reg82.91e-27261341109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ +++l+++l+k +y +v+++ ++ +al++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++ e++++ +  G
  Cucsa.132590.1  26 VLAVDDDPICLKVLENLLRKCQY-HVTTTNQAVQALKMLRENKnrFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSNTELVKKGVLHG 118
                     799********************.***************888888*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel +
  Cucsa.132590.1 119 ACDYLLKPVRIEELKN 134
                     *************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.5E-1491699IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.0E-4223153No hitNo description
SuperFamilySSF521729.53E-3723148IPR011006CheY-like superfamily
SMARTSM004484.8E-3424136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.36625140IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-2526134IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.97E-3027140No hitNo description
SuperFamilySSF466896.99E-15208270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-24208270IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-21210266IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MTVEVRKTNL VGENDDMEQF PIGMRVLAVD DDPICLKVLE NLLRKCQYHV TTTNQAVQAL  60
KMLRENKNRF DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSNTEL VKKGVLHGAC  120
DYLLKPVRIE ELKNIWQHVL RRKKPSVKNQ NKSIIGNNTS QSVEVAKGCP PAVSTDNEKS  180
GKRQKDQDDD EEGGEEDSTY ENDDSSTQKK PRVNWYDGDE NLHRKFVAAV NILGYEKAVP  240
KKILDLMNVE GLTRENVASH LQKYRQYLKK LCSEESEQCN KMGAFGGTHT SFRPMASLDG  300
FSMTGTGRLS NATFSQYPSR EIVGQLNSTA GLSLNDIASS GMIQSHKLSN SLSFIGKPHP  360
PFFHTNQPPH TFNGISMSLD HIQLHRDKRT LSFKESNLIN DASSFTVSTS FPDAGRAVGS  420
SSNYDFGVSS HSLMLREHKQ QIHGDGEFGG QSSLKITLDN REPLDSGTSV SNILGHSQSN  480
KNWPGSIQLP KFSSNVSVTG IYPPDGMPGT YLTISSAQPD NDNFPVGFPS TSGDSSSHLD  540
LRGDTQCYEE LIGSVVEATN GRSKQQWEAA KQDYYGNHSS VVRDSFVSGN SVADPLIQSA  600
NQNNAICLGN MSSSSTNQLN IGAPTFIHDG VEISTMNTWM NYDGKIPMDQ TKLQHGFSSS  660
SFNSLDELVN ALSKQDQDQS IQINGEFGFD AQSLGSSCI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-21206271163ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139402.10.0PREDICTED: two-component response regulator ARR12
RefseqXP_011648717.10.0PREDICTED: two-component response regulator ARR12
TrEMBLA0A0A0LI680.0A0A0A0LI68_CUCSA; Uncharacterized protein
STRINGXP_004159429.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95634112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-106response regulator 12
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]