PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.127020.1
Common NameCsa_1G077150, LOC105435209
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 125aa    MW: 13529.2 Da    PI: 10.9417
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.127020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP87.92.3e-27241101097
             TCP  10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaaks 97 
                     k++T++g+R RR Rlsa++a++f+dLqd+LG  ++ ++i+WLl +ak ai++l +  ++  ++c ++s s  + +sss+++++s+ +s
  Cucsa.127020.1  24 KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSS-SS 110
                     9*******************************************************77777778333333333322222222111.11 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136921.5811576IPR017887Transcription factor TCP subgroup
PfamPF036341.6E-2424119IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
NTTKIARRNR RLSSTADAGA GVGKVYTSKG LRARRLRLSA PTAIKFYDLQ DRLGCGRPTE  60
AIDWLLLNAK SAIDALSRPL QTEDNDCRKQ SFSLPVPSSS SSSSSSSSSS QFQSYPLQNF  120
SQKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-162476254Putative transcription factor PCF6
5zkt_B1e-162476254Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819321e-106LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132661e-106LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653401.12e-82PREDICTED: transcription factor PCF8-like
TrEMBLA0A0A0LUP14e-81A0A0A0LUP1_CUCSA; Uncharacterized protein
STRINGXP_008443015.17e-52(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.12e-20TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]