PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.122130.1
Common NameCsa_1G043000, LOC105434831
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family G2-like
Protein Properties Length: 358aa    MW: 40336.6 Da    PI: 9.4343
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.122130.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.6e-31179232255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt+ LH+rF++ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Cucsa.122130.1 179 PRMRWTSSLHARFIRAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 232
                     9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-28177233IPR009057Homeodomain-like
SuperFamilySSF466894.48E-15177233IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-23179232IPR006447Myb domain, plants
PfamPF002493.1E-7180231IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MLEKGIIVPD LSLQISPPKS NQSPSVDIWP QQMQVQQVDT ELSLSNNSTS AIDVSTDRFR  60
PIRGIPVYNN GLLSSSRYFN RNQQPTTSSS SMSPPPCLSF RAFQQQQDQA VGRYNGITME  120
GLRNQEQNFN HQNQNHQFVF QNQQSLHFGV SDFSSNYSNN RSRSLLMPRI QSRRNARAPR  180
MRWTSSLHAR FIRAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKNTDKQT  240
ASSEGSGEED FLPATPTPHH EANCLLNHRR NFTNNPSSLD HPHPHLTNGI STPSINNQSN  300
SSRRAWERSS PGSANVFGSE NQSEECYELG HPNSLMGLNL NLNSPSKELS MKHNWHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-17180234458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-17180234458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-17180234357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-17180234357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-17180234357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-17180234357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-17180234458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-17180234458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-17180234458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-17180234458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-17180234458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-17180234458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650937.10.0PREDICTED: transcription repressor KAN1-like isoform X1
TrEMBLA0A0A0LVX90.0A0A0A0LVX9_CUCSA; Uncharacterized protein
STRINGXP_008467044.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17563391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.13e-42G2-like family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]