PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.119440.1
Common NameCsa_6G124180, LOC101207656
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 180aa    MW: 19878.7 Da    PI: 10.0412
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.119440.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-1865115155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr++  +g+WvAeIr p   + r  r +lg+f ta +Aa a+++a+++++g
  Cucsa.119440.1  65 CNYRGVRQRT-WGKWVAEIRAP---N-RgSRLWLGTFPTAIDAALAYDEAARAMYG 115
                     56*****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.79E-3065125No hitNo description
PfamPF008471.7E-1265115IPR001471AP2/ERF domain
SMARTSM003803.5E-3666129IPR001471AP2/ERF domain
PROSITE profilePS5103221.49666123IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-2166123IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-3166124IPR001471AP2/ERF domain
PRINTSPR003677.8E-106778IPR001471AP2/ERF domain
PRINTSPR003677.8E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MPKLEKLQTR RPGSLSVAET LAKWKDYNDH LDSCTDEPKL TRRVPAKGSK KGCMKGKGGP  60
ENMRCNYRGV RQRTWGKWVA EIRAPNRGSR LWLGTFPTAI DAALAYDEAA RAMYGTLARL  120
NFPNVSIPTL LKGKELSRKD SRDEIKRPSL SFLGSTSLSL SSESTITSDL SEDCAVEDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1866123563ATERF1
3gcc_A1e-1866123563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:12609047}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:12609047}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819210.0LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656930.11e-130PREDICTED: dehydration-responsive element-binding protein 2A-like
SwissprotA2WL195e-50DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
SwissprotQ0JQF75e-50DRE2A_ORYSJ; Dehydration-responsive element-binding protein 2A
TrEMBLA0A0A0KB021e-128A0A0A0KB02_CUCSA; Uncharacterized protein
STRINGXP_004139956.11e-129(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.26e-33DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Sun SJ, et al.
    Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice.
    J. Exp. Bot., 2010. 61(10): p. 2807-18
    [PMID:20460361]
  4. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  5. Mallikarjuna G,Mallikarjuna K,Reddy MK,Kaul T
    Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.).
    Biotechnol. Lett., 2011. 33(8): p. 1689-97
    [PMID:21528404]
  6. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  7. Cui M, et al.
    Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice.
    Plant Physiol. Biochem., 2011. 49(12): p. 1384-91
    [PMID:22078375]
  8. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  9. Li X, et al.
    LcSAIN1, a novel salt-induced gene from sheepgrass, confers salt stress tolerance in transgenic Arabidopsis and rice.
    Plant Cell Physiol., 2013. 54(7): p. 1172-85
    [PMID:23695503]
  10. Schmidt R, et al.
    Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice.
    Plant Cell, 2013. 25(6): p. 2115-31
    [PMID:23800963]
  11. Huang YC,Huang WL,Hong CY,Lur HS,Chang MC
    Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance.
    Rice (N Y), 2012. 5(1): p. 33
    [PMID:24279948]
  12. Zhang XX, et al.
    OsDREB2A, a rice transcription factor, significantly affects salt tolerance in transgenic soybean.
    PLoS ONE, 2013. 8(12): p. e83011
    [PMID:24376625]
  13. Wang ST, et al.
    MicroRNA319 positively regulates cold tolerance by targeting OsPCF6 and OsTCP21 in rice (Oryza sativa L.).
    PLoS ONE, 2014. 9(3): p. e91357
    [PMID:24667308]
  14. Ma T, et al.
    LcWRKY5: an unknown function gene from sheepgrass improves drought tolerance in transgenic Arabidopsis.
    Plant Cell Rep., 2014. 33(9): p. 1507-18
    [PMID:24913125]
  15. Zhao J, et al.
    Global transcriptional profiling of a cold-tolerant rice variety under moderate cold stress reveals different cold stress response mechanisms.
    Physiol Plant, 2015. 154(3): p. 381-94
    [PMID:25263631]
  16. Chen M,Zhao Y,Zhuo C,Lu S,Guo Z
    Overexpression of a NF-YC transcription factor from bermudagrass confers tolerance to drought and salinity in transgenic rice.
    Plant Biotechnol. J., 2015. 13(4): p. 482-91
    [PMID:25283804]
  17. Gao Y, et al.
    A maize phytochrome-interacting factor 3 improves drought and salt stress tolerance in rice.
    Plant Mol. Biol., 2015. 87(4-5): p. 413-28
    [PMID:25636202]
  18. Cai W, et al.
    Overexpression of Rat Neurons Nitric Oxide Synthase in Rice Enhances Drought and Salt Tolerance.
    PLoS ONE, 2015. 10(6): p. e0131599
    [PMID:26121399]
  19. Sakuraba Y, et al.
    Rice ONAC106 Inhibits Leaf Senescence and Increases Salt Tolerance and Tiller Angle.
    Plant Cell Physiol., 2015. 56(12): p. 2325-39
    [PMID:26443376]
  20. Sato H, et al.
    The Arabidopsis transcriptional regulator DPB3-1 enhances heat stress tolerance without growth retardation in rice.
    Plant Biotechnol. J., 2016. 14(8): p. 1756-67
    [PMID:26841113]
  21. Yu Y, et al.
    Transgenic rice expressing a cassava (Manihot esculenta Crantz) plasma membrane gene MePMP3-2 exhibits enhanced tolerance to salt and drought stresses.
    Genet. Mol. Res., 2016.
    [PMID:26909954]