PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.114700.1
Common NameCsa_4G055350, LOC101206472
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 275aa    MW: 32712.8 Da    PI: 8.0097
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.114700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.52e-19997186
        trihelix  1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                    +W+++e+++ i++r ++e++l + +       +kk+lWe  s +mre+gf r++ qCk+kw+nl  ryk  +++ k+       +cp+f++++
  Cucsa.114700.1  9 QWSEEETREFIRIRADLEKDLAAVSigeapaaKKKTLWEMASVRMREKGFWRTADQCKCKWKNLLSRYKGKETSHKEY----GWQCPFFEEIH 97
                    7*********************8544445555**************************************99999984....558*****998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-17898No hitNo description
CDDcd122031.65E-16980No hitNo description
PROSITE profilePS500906.8291073IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAATPHQHQW SEEETREFIR IRADLEKDLA AVSIGEAPAA KKKTLWEMAS VRMREKGFWR  60
TADQCKCKWK NLLSRYKGKE TSHKEYGWQC PFFEEIHAVF TERGKAMHRL LLEPEACSIS  120
TKKRGRERSL EEHSDLKELN EDENEEEVTF TQSNSQKRKA ARKLPAKSLG ATDSKSSSSS  180
TSNEIQEMLK GFFQWQQRME MEWREIVERH YNNRRMFEQE WRESMEKLER ERLMAEQAWR  240
EREEQRKERQ DIRAEGMNAL LTTLLNKLNH ENNL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148982.10.0PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLA0A0A0KV130.0A0A0A0KV13_CUCSA; Uncharacterized protein
STRINGGLYMA01G35370.29e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17813385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.13e-23Trihelix family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]