PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.113660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 363aa    MW: 41374.7 Da    PI: 10.1967
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.113660.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.27.1e-39852363133
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg...... 88 
                      kkdrhski T++g RdRR+Rls+++a++fF Lqd+LG+dk skt+eWLl qakp+i +l+  + +++  c   +++ss+ s+s+   +      
  Cucsa.113660.1  85 SKKDRHSKITTAKGVRDRRMRLSLPVAKQFFGLQDMLGVDKGSKTVEWLLIQAKPEILKLATEKKNHN--CftiSNSSSNYSNSS---Eldnevg 174
                     69*************************************************************66666..543433333333332...2234667 PP

             TCP  89 .................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                                      +++k ++k+  + k+      +ake r+kar+rar rt ek + +
  Cucsa.113660.1 175 viigdqnlntkdnnikiSKKKIKKKKIMRAKQLPIRKTMAKELREKARERARARTLEKLKSQ 236
                     77777777788888877333333344444444555689999****************99866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-4085234IPR005333Transcription factor, TCP
PROSITE profilePS5136931.40786144IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.959215232IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
SGNTKNVHDP FGNLSHDLDH SFHLPISFFP FPSPFEVDDD RDLNFTTNSP SNSSQNYNNN  60
PPPIISTYQK MKKMMKKVPQ RKRLSKKDRH SKITTAKGVR DRRMRLSLPV AKQFFGLQDM  120
LGVDKGSKTV EWLLIQAKPE ILKLATEKKN HNCFTISNSS SNYSNSSELD NEVGVIIGDQ  180
NLNTKDNNIK ISKKKIKKKK IMRAKQLPIR KTMAKELREK ARERARARTL EKLKSQMFIR  240
DSACCSDDHQ PNFTNINSSS SWSSPFETTG GEESAGTTTH QSNNNNNPIT SQFDSQFHQI  300
FSSFDFILPK WSPSDDSTFN FLHQQVSFEV NLLLFFLFNL NQTVYGLVAS MLQVSTTWDF  360
DS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650456.10.0PREDICTED: transcription factor TCP18-like
TrEMBLA0A0A0LVQ10.0A0A0A0LVQ1_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.21e-30TCP family protein