PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.111880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 472aa    MW: 51362.6 Da    PI: 7.2048
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.111880.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.76.1e-36912502134
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec 73 
                      g+kdrhsk+ T++g+RdRRvRls+ +a++f+dLqd+LGf ++sk++eWL+++a  ai el+++                       +++s+ e+
  Cucsa.111880.1  91 SGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFEQPSKAVEWLIEAASDAIAELPSLsgsfpetprqlsdekmgsdgadqGFDSP-EM 184
                     689*************************************************************8877766666666665555444322222.12 PP

             TCP  74 .eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134
                       +++ ++ ++n++++ + + +a+s++s++s+ s l+l++      rakar rarert++++  ++
  Cucsa.111880.1 185 eLDGDPKKHQQNPRQQLSLARSACSSNSETSKGSGLSLSRseilVNRAKARDRARERTAKEKEREQ 250
                     33333333333444444555555666666666666666664444667*********8776655443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.0E-4192247IPR005333Transcription factor, TCP
PROSITE profilePS5136930.38593151IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.148228246IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MEVLDIQEQA CRFPRIGNGR NDSNKLGQKG IVQYTPDDEE DKEFSKRVAV VTSATVNPTG  60
RCEPGGIGGV GANRLHGWHH SSRIIRVARA SGGKDRHSKV WTSKGLRDRR VRLSVATAIQ  120
FYDLQDRLGF EQPSKAVEWL IEAASDAIAE LPSLSGSFPE TPRQLSDEKM GSDGADQGFD  180
SPEMELDGDP KKHQQNPRQQ LSLARSACSS NSETSKGSGL SLSRSEILVN RAKARDRARE  240
RTAKEKEREQ ESRDAHCIPN NPSFTELLTG GINNNGANNT TNRTNSASQN NVVEPNLFDK  300
ATAMDYLASS GIIAQQPSSS SSSRPGHNQS AGFSGQIFLG NPHQLPVSIP QFNISAAENT  360
QQDRLQHFSF VPDNLNDYNL NFTISAGLAG CNRGTLQSNI SPSFLPYLQR FPHLEGSNVP  420
FFIGAASPTT ATTPVQLENH HQLTPALFDG SWQLCYADGS HHSDQKGKGK N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-2298152155Putative transcription factor PCF6
5zkt_B6e-2298152155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011649359.10.0PREDICTED: transcription factor TCP2
RefseqXP_011649361.10.0PREDICTED: transcription factor TCP2
RefseqXP_011649362.10.0PREDICTED: transcription factor TCP2
TrEMBLA0A1S4DV390.0A0A1S4DV39_CUCME; transcription factor TCP2-like
STRINGXP_008444530.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-47TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2