PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.082250.1
Common NameCsa_1G408200, LOC101211455
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family G2-like
Protein Properties Length: 455aa    MW: 50276.7 Da    PI: 6.4203
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.082250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.8e-32247302156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Cucsa.082250.1 247 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 302
                     68****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-17244305IPR009057Homeodomain-like
PROSITE profilePS5129413.355244304IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-28245305IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-26247302IPR006447Myb domain, plants
PfamPF002497.9E-7249300IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MCVMGSTAEL SLECTVESYS MLLKYSFGDH HDHDQSYDKL QDFVSRLEEE RLKIDVFKRE  60
LPLCMQLLTN AVETSRRQLQ ACKTMEAAAA VGAPTEPILE EFMPLKNSTP AEDEKPTTIT  120
SDKANWMTSV QLWSQAGDVS KQQSESTDDH SKLQDRNNNN NNNNKDNNLE TCSQRINNNG  180
AFVPFNKDRS SGPAAKMELL EKGEKKNCSD NNSSIDGGVV VMAAEQRSEN GAAEVGSGPT  240
TTQTHRKARR CWSPDLHRRF VNALQMLGGS QVATPKQIRE LMKVDGLTND EVKSHLQKYR  300
LHTRRPGPTQ QASGPPAAQL VVLGLGGLWV PPEYAAAAAA PPALYGPAAP SHPPSHFYTP  360
PEFYARTAPP PHLQHHHHHH HQVQLYKGAP PQATQSSPES EVRDTAERSE SFEEEKSGSS  420
SWRIEGGENG RGSCGRRSEE NEESNNRSEI TLKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-13247300255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-13247300255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-13247300154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-13247300154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-13247300154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-13247300154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-13247300255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-13247300255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-13247300255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-13247300255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-13247300255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-13247300255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818100.0LN681810.1 Cucumis melo genomic scaffold, anchoredscaffold00077.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656592.10.0PREDICTED: uncharacterized protein LOC101211455
TrEMBLA0A0A0LX100.0A0A0A0LX10_CUCSA; Uncharacterized protein
STRINGXP_008463337.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.13e-91G2-like family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]