PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.064390.1
Common NameCsa_4G378010, LOC101214560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 359aa    MW: 39338.7 Da    PI: 6.8551
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.064390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20174223255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Cucsa.064390.1 174 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAFKLRG 223
                     59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.96E-35173233No hitNo description
SuperFamilySSF541714.64E-23174231IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-33174232IPR001471AP2/ERF domain
SMARTSM003801.4E-40174237IPR001471AP2/ERF domain
PROSITE profilePS5103223.591174231IPR001471AP2/ERF domain
PfamPF008471.6E-14175223IPR001471AP2/ERF domain
PRINTSPR003673.5E-11175186IPR001471AP2/ERF domain
PRINTSPR003673.5E-11197213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEAAMDFYNE GSQTDHFGGE LMEAIVPFIK VASSSSSSLS TFPSSSSPTP YLSPHYSSSF  60
NTHLNFSHSA SQQSNLYPNG CSTSMNPVFS DGFSTQNLIG FEQPVTIGPH QLSSSQIPHS  120
QPQNNLLQNQ TPLAFAWGQQ NHQPPSSSEQ PPSFLAPKPI PMKQVGSSSK PTKLYRGVRQ  180
RHWGKWVAEI RLPRNRTRLW LGTFDTAEEA ALAYDKAAFK LRGDSARLNF PNLKHQGSCV  240
EGEFGEYRPL HSSVAAKLQA ICDNLAKPQK QGNSKKPVTA AKKSKSQSCS MAEETAAVKV  300
ENSSSRAVTE SDGSEASSPL SDLTFPDFTE MLWDQSQPWE NSMLEKYPSE IDWASILP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22173231160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818670.0LN681867.1 Cucumis melo genomic scaffold, anchoredscaffold00013.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142609.10.0PREDICTED: ethylene-responsive transcription factor RAP2-13-like
SwissprotQ8H1E43e-77RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0A0L0N80.0A0A0A0L0N8_CUCSA; Uncharacterized protein
STRINGXP_004142609.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-62related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  6. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  7. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  8. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]