PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.053510.1
Common NameCsa_3G392775
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 197aa    MW: 22432.7 Da    PI: 7.8351
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.053510.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000224365123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C+ C++ F++   L  H+++H
  Cucsa.053510.1 43 YGCNFCKREFKSAQALGGHMNVH 65
                    67*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.23E-64070No hitNo description
Gene3DG3DSA:3.30.160.607.3E-44168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.0E-64366IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8244370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDNGAYMNNN TNNGKQQQQQ QQRGYAKEGT FSSNEFQWPA KNYGCNFCKR EFKSAQALGG  60
HMNVHRRDRA RMRLLPSWVS DNNYNNNYYS CPNPNFSNFS PSCFNFRSSS NKNSLCSSLQ  120
DQDKKEIGSC SWNNNIYKPS SLVVPHDDQE HVDDDADQVL HVFKKKKKGM VNLELKMGSL  180
GDASSNNEDL DLELHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818260.0LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652797.11e-144PREDICTED: uncharacterized protein LOC101216448
TrEMBLA0A0A0L7I01e-143A0A0A0L7I0_CUCSA; Uncharacterized protein
STRINGXP_008454679.11e-120(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.13e-21zinc finger protein 11
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]