PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.050500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 393aa    MW: 44339.8 Da    PI: 8.7698
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.050500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.96.3e-1957150286
        trihelix   2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                     Wt qe++ Li+a++ ++er ++++              + +W++v ++++++g++rs++qC++kw+nl ++ykk++e e++  ++++  +p + +
  Cucsa.050500.1  57 WTLQETMILITAKKLDDERRNKANlgpstvdpaarkGGELRWKWVENYCWSHGCQRSQNQCNDKWDNLLRDYKKVREYESRA-CDQQ--IPSYWK 148
                     **************99999999866667777777657799****************************************95.6665..899999 PP

        trihelix  85 le 86 
                     +e
  Cucsa.050500.1 149 ME 150
                     97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.96949125IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-651127IPR009057Homeodomain-like
PfamPF138371.4E-1256150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSDPPTTSSE PPHHHHQQHL PRLPVIHSGA TGGTRMNTAA ATSSSAVIVR EYRKGNWTLQ  60
ETMILITAKK LDDERRNKAN LGPSTVDPAA RKGGELRWKW VENYCWSHGC QRSQNQCNDK  120
WDNLLRDYKK VREYESRACD QQIPSYWKME KHERKDKNLP SNMAFEVYQA LNDVVQRKFS  180
QKPSNSSNTG ILLLPLPAPP PSALLPPPTA TNSPQLSESS SSGTESSEKK EKVEAKRRKM  240
EDNIGRRIER SVSALGQTLH SCEEQREIRH QQLMELRKRR LQIEETRNHI HRQGIADLVA  300
AVANLSAGID NDRRGRSEGY ESCLYSGEEV RILKEQNEAM QAELMNVKNE LSQLRDQMPS  360
LMQTMMHNML HNIPPPPPST SSMDPSGSGG DA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819000.0LN681900.1 Cucumis melo genomic scaffold, anchoredscaffold00041.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140413.20.0PREDICTED: trihelix transcription factor PTL-like
TrEMBLA0A1S3C4820.0A0A1S3C482_CUCME; trihelix transcription factor PTL-like
STRINGXP_008456886.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.19e-48Trihelix family protein