PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.047860.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 454aa    MW: 49155.2 Da    PI: 9.2429
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.047860.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.19.3e-36862352134
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasec...eae 76 
                      g+kdrhsk+ T++g+RdRRvRls+ +a++f+dLqd+LGf ++sk++eWL+++a  aikel+++                        +    + 
  Cucsa.047860.1  86 SGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFEQPSKAVEWLIKAAADAIKELPSLnasfpetpkqlsgekisV------TdrpGPL 174
                     689*************************************************************665554443333222210......1222222 PP

             TCP  77 sssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134
                     +s++++ +s+ + + +++a+s++s++s+ s l+l++      r kar+ra+er ++++ +++
  Cucsa.047860.1 175 DSVEQK-HSQLHVSLSKSACSSNSETSKGSGLSLSRsevrVNRLKARERAKERAQKEKEKEQ 235
                     222222.2333355555567777777777777777753335669999999996655554443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-4087233IPR005333Transcription factor, TCP
PROSITE profilePS5136931.66288146IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.617213231IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEVVDNIQEQ PRKFPRLANG RSSDSNEIGL KGVENIHTGD EKDKESKRDG GITAGVGGGG  60
LGGADDETNR LRGWHHSRII RVSRASGGKD RHSKVWTSKG LRDRRVRLSV ATAIQFYDLQ  120
DRLGFEQPSK AVEWLIKAAA DAIKELPSLN ASFPETPKQL SGEKISVTDR PGPLDSVEQK  180
HSQLHVSLSK SACSSNSETS KGSGLSLSRS EVRVNRLKAR ERAKERAQKE KEKEQDSSRI  240
TDHNLSSMTR NSSFTELLAG GAASVSAHRD AGVAAERQWQ SSTVAMDYFS SGILEPSTSR  300
THHSSGFSDQ MNLGTSLPQT MSSTPLFSSV STGDSNAEQL HQFSFVHDGN IVPVATTQPG  360
GGNDYSLNFT ISSNLPGYYR GTLQSNSSLL PHLQRFSPVD GSNLPFLFGA ATSAAPQLEN  420
HNHYQFSPAF DGRLQLCYGG GNRQSEQKGK GKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2293147155Putative transcription factor PCF6
5zkt_B5e-2293147155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134620.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A1S3AZT20.0A0A1S3AZT2_CUCME; transcription factor TCP2-like
STRINGXP_004134620.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-71TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2