PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.031600.1
Common NameCsa_3G265270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 288aa    MW: 32700 Da    PI: 10.3843
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.031600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP146.61.8e-45151623134
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec.....eaessss 80 
                     gkkdrhski+T++g+RdRRvRls+++a++fFdLqd+LG+dk+skt+eWL+ ++k+aikel +t            +     ++     ++++++ 
  Cucsa.031600.1  15 GKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTksgnigvhggakK-----FSlvadsSDVEEEY 104
                     89*************************************************************7777766543331.....22222112333333 PP

             TCP  81 sasnsssg......kaaksaa.kskksqksaasalnlakesrakarararertrekmrikn 134
                      +++   +      k++ s   ++k s+++ + ++ lakesrakarararert ek++ +n
  Cucsa.031600.1 105 DDDK---EgwelkmKSMLSIDeQEKVSKEKVEGFNLLAKESRAKARARARERTMEKKQVDN 162
                     3332...14567763333333355556666666688889*****************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-4315159IPR005333Transcription factor, TCP
PROSITE profilePS5136936.4861674IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.397140157IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MVIPSAPGSG TTGMGKKDRH SKIYTAQGLR DRRVRLSIDI ARKFFDLQDM LGYDKASKTL  60
EWLFSKSKKA IKELSRTKSG NIGVHGGAKK FSLVADSSDV EEEYDDDKEG WELKMKSMLS  120
IDEQEKVSKE KVEGFNLLAK ESRAKARARA RERTMEKKQV DNRKVYGHQK GGAQEVSNHW  180
SKHLNHSTET SNLSMEESSF INKRKIIYSK KFINHDNYSD KSRRDDENAE TSQRKLLDQM  240
KASKRKWKPS IISGSSQRNL LISIDGIPIN LTQNLDTNSN PNYPIAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-142174154Putative transcription factor PCF6
5zkt_B1e-142174154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818560.0LN681856.1 Cucumis melo genomic scaffold, anchoredscaffold00062.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651364.10.0PREDICTED: transcription factor CYCLOIDEA
SwissprotQ9FYG75e-29TCP1_ARATH; Transcription factor TCP1
TrEMBLA0A0A0LCE80.0A0A0A0LCE8_CUCSA; Uncharacterized protein
STRINGXP_008461599.11e-165(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-28TCP family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]