PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.031350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 365aa    MW: 39881.9 Da    PI: 8.8575
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.031350.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601002.3e-3166169199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+
  Cucsa.031350.1  66 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQA 160
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l ++
  Cucsa.031350.1 161 AVEAVLKGA 169
                     ***998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.00265171IPR004883Lateral organ boundaries, LOB
PfamPF031958.3E-2566164IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAPPSRLYIY YFPSFSPLNI LYTSLLSLLY LPNPFPPIFI LSLHTCFFPF YASLLPLLFF  60
FKMRMSCNGC RVLRKGCSEN CSIRPCLQWI KSPESQANAT VFLAKFYGRA GLMNLINAGP  120
DHLRPAIFRS LLYEACGRIV NPIYGSVGLL WSGSWQLCQA AVEAVLKGAP ITPINSEAAT  180
TGDGPPLKAY DIRHVSKDEN SVASNDGGAN RPVKTRCRFK RSSVKAKASK GIASTVVDES  240
TRPVCSTELN RSSSGESSLS HQSDSRHLEN ESKETESMIS VETAEVSPRP AQSVLFRSES  300
TGGREGVSVP IPQSELALEL TLGMEPVLRA QHVIPMKKRK IEAEVGLRPK SETCNTVLGL  360
DFAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818560.0LN681856.1 Cucumis melo genomic scaffold, anchoredscaffold00062.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145641.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-104LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0A0LCG60.0A0A0A0LCG6_CUCSA; Uncharacterized protein
STRINGXP_004145641.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-101LOB domain-containing protein 41