PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.014000.1
Common NameCsa_5G352090, LOC101214586
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 238aa    MW: 24430.5 Da    PI: 10.5726
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.014000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.92.9e-371386274
             TCP  2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74
                    ++kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  
  Cucsa.014000.1 13 PVKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStI 86
                    579*************************************************************9999977731 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.9921973IPR017887Transcription factor TCP subgroup
PfamPF036341.4E-321999IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
GNQSSNNAAT PLPVKKPPSK DRHSKVDGRG RRIRMPIVCA ARVFQLTREL GHKSDGQTIE  60
WLLRQAEPSI IAATGTGTTP ASFSTISASL RTPPAASLSD HKPLLPPAPF ILGKRVRTDD  120
DGANKDDTGG AGAGISVGPS IGSIMGPAVA GGYWAIPARS DFGQVWSFAA AAAAAAAPEM  180
VIQPTAVSHQ ASLFVQQQSM GEASAAKVGN YLPGHLNLLA SLSGGPGSSG RRDNDHR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818590.0LN681859.1 Cucumis melo genomic scaffold, anchoredscaffold00078.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149871.11e-171PREDICTED: transcription factor TCP21
SwissprotQ9FMX22e-86TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0A0KMY31e-170A0A0A0KMY3_CUCSA; Uncharacterized protein
STRINGXP_004149871.11e-170(Cucumis sativus)
STRINGXP_004166070.11e-170(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.15e-65TCP family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]