PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.4_#_260
Common NameCOCSUDRAFT_40611
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family MYB_related
Protein Properties Length: 380aa    MW: 41474.3 Da    PI: 7.074
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.4_#_260genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-075694647
                         HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +eEd+l+++a ++    +W+ Ia++++ gR+   ++ ++ + 
  fgenesh1_pg.4_#_260 56 PEEDDLILQARELNK--SWAEIASMLP-GRSSTAIRKHYTNT 94
                         79********99987..6*********.***********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.2785099IPR017930Myb domain
SMARTSM007177.3E-75097IPR001005SANT/Myb domain
SuperFamilySSF466897.48E-853109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-95498IPR009057Homeodomain-like
PfamPF002495.0E-75694IPR001005SANT/Myb domain
CDDcd001671.09E-75695No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MIASGATVQR VSILDSRLFV PKRQTVQEAQ VPASRITDTH VPRPQVLPAT GTSYLPEEDD  60
LILQARELNK SWAEIASMLP GRSSTAIRKH YTNTLRPKPT PAPRQRAEDA WEDNGRQSSP  120
GPSAGPPGRA ATPQSSKKRP PADTSRLASL ERSIDSRAAA RASSAAPEKQ AGNGGADKGH  180
VGVVEVDGRC TDRTGGDARV KLLQPFKQPP PGNTVQEAHK LPSLQGVRFY QAVTVQDPDD  240
GQKEYSLDLA DTAHGACFNI GMGPDGSPLI SWSDLHALYE LPDGTKWAEH GFFHDVEDME  300
ELARDKGRAS VSLAAKGAEK QELFRKAGRY HSRLQNIEYE CWVFKGSLPS QEELAAKDLE  360
PTDAYFWRIT FHPKTLETL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005649878.10.0hypothetical protein COCSUDRAFT_40611
TrEMBLI0Z3W50.0I0Z3W5_COCSC; Uncharacterized protein
STRINGXP_005649878.10.0(Coccomyxa subellipsoidea)
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]