PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genewise1Plus.C_100148
Common NameCOCSUDRAFT_29579
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family MYB_related
Protein Properties Length: 267aa    MW: 29908.7 Da    PI: 9.8818
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genewise1Plus.C_100148genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.5e-09197241246
                                    SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46 
                                    g WT+eE+el+++  + +G g  W + a++++  R ++qc  ++++
  estExt_Genewise1Plus.C_100148 197 GDWTEEEHELFLETARAHGVGdKWGLFASHIP-ARVGYQCSAYYRD 241
                                    68******************************.********99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-8191243IPR009057Homeodomain-like
PROSITE profilePS500908.606191243IPR017877Myb-like domain
SuperFamilySSF466896.95E-9196245IPR009057Homeodomain-like
PfamPF002493.6E-7197241IPR001005SANT/Myb domain
CDDcd001673.42E-5199240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MMTGRSRVPH EPPTAPLNDY ERQREERIKR NNAILEQLGV HTAAQAVAAS HGRRLPQRHK  60
RKVAAKGAVR KCTRLRRDTQ PAPQTESLKA LDSEHNELMI LREYFKWKGE VVTGFVVDGH  120
YHGWVSPAVC KKYGIVESEE EAFASAGGSK AGAKGAKSGK MHGWSNARAF SATQLRTNPN  180
AYFYRHVEPD EEQQAQGDWT EEEHELFLET ARAHGVGDKW GLFASHIPAR VGYQCSAYYR  240
DTIIPRGLII DQRFRMTQAG KAVFVG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005646821.10.0hypothetical protein COCSUDRAFT_29579
TrEMBLI0YV580.0I0YV58_COCSC; Uncharacterized protein
STRINGXP_005646821.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP463677
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]