PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genemark1.C_40529
Common NameCOCSUDRAFT_65304
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family MYB_related
Protein Properties Length: 490aa    MW: 51744.3 Da    PI: 6.5194
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genemark1.C_40529genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.4e-10351399247
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                               grW + E   l+++v+q+G+g Wk+I ++     ++R+  ++k++w+++
  estExt_Genemark1.C_40529 351 GRWAEHETNTLIELVRQWGKGKWKKILEEGAaafNNRSQVDLKDKWRNL 399
                               8**************************99889999************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.84345404IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-12346402IPR009057Homeodomain-like
SMARTSM007173.0E-6349402IPR001005SANT/Myb domain
PfamPF002491.6E-7351399IPR001005SANT/Myb domain
SuperFamilySSF466897.9E-13351405IPR009057Homeodomain-like
CDDcd116604.79E-14353401No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAGKAEQWVL EFLLDRDSLS ETVVRELYEH LGMGADALSK TIQVRLLLRV LREHAASISD  60
GTLNALNCLA ANSTDNKADY SPFADLSKLV PSLDLYLQVK TELVLQSLRG GSLDTLLHSG  120
NPKEMLDRYF PPPPEGLQNA PEGQRRDELA IGLQSAAGTQ VLLEKYPPGH VEATMLKYVA  180
EGRAAMGQPI LKVMEAQYAQ GLLHPTISSA HPQGAFGNFS IAPKKRQRHS AASNADVAAA  240
TTIADLQAAS KGLQNKGGPD PFPAAMQAAG GQGSFAAALN AVDHGAGPSM TPGMPDGSGR  300
TVGWDSPDPN QVTPGANIGG MLGPNGEPLT DGSMGKSPKN RTGGGKRRRN GRWAEHETNT  360
LIELVRQWGK GKWKKILEEG AAAFNNRSQV DLKDKWRNLE RQGVVQASDG VLPGSAGVLS  420
PEQQQAQQQQ QQQQPMVDAA ALMAPDGGAM MQVQDPAAAA AAAAAAHAQA VGQQEQMMHH  480
VEGGMPAQM*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005650104.10.0hypothetical protein COCSUDRAFT_65304
TrEMBLI0Z4J10.0I0Z4J1_COCSC; Uncharacterized protein
STRINGXP_005650104.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3956912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.14e-08TRF-like 5
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]