PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Genemark1.2462_g
Common NameCOCSUDRAFT_61672
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family MYB_related
Protein Properties Length: 474aa    MW: 50717.9 Da    PI: 6.8269
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Genemark1.2462_ggenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.2e-09370419248
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 
                       ++W+ eE e lv +v++ Ggg W+ I + +g      R++ ++k++w++++
  Genemark1.2462_g 370 NPWSIEETEALVVGVERCGGGKWADIKK-LGfpiiAQRSAVDLKDKWRNLM 419
                       69***********************966.5557**99************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-12363422IPR009057Homeodomain-like
PROSITE profilePS5129411.586364423IPR017930Myb domain
SuperFamilySSF466891.39E-15366451IPR009057Homeodomain-like
SMARTSM007170.0031368421IPR001005SANT/Myb domain
PfamPF002498.3E-7370418IPR001005SANT/Myb domain
CDDcd116602.43E-21371420No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MQSFSVHQAP ESLEGQDEYD LFGITRSMDW LDADGQQTPR GASPKPEDAD FGLRTGPLSR  60
LYLDEISEEH HSCSETSIAP FHHLGTPSYM LSDASASGAV LPCGASPAAH LLGRNTSGEL  120
QFLMETEGDL CNPSAMLEGG MPIHKPASSN SIADGGGALY PATPPQNILS KRDWLDPYHR  180
SSPQDSGTSV FSSRSSMDTV HLLADVPDVP LDGPLGSRNI HLPYGFERYS SLDSCAGLGD  240
LAAEEVLVGI EPLCASPPPT PLGMCYAPLP AHGRSSRAAG SPRACSSPAA SAPAEKAESE  300
GYTGLRQRAC KRKVKYSDTE PPLGSASDGP RSLVTSARGR CSKPRRFFCA GAESDEEVSE  360
GSNKRRKHHN PWSIEETEAL VVGVERCGGG KWADIKKLGF PIIAQRSAVD LKDKWRNLMR  420
VALLPGTAAK TKIEKRREVP QELLDRVRTL SASFGSKASA SARPYLGRPR RSV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005649999.10.0hypothetical protein COCSUDRAFT_61672
TrEMBLI0Z4860.0I0Z486_COCSC; Uncharacterized protein
STRINGXP_005649999.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1276916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.13e-17TRF-like 6
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]