PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Genemark1.1027_g
Common NameCOCSUDRAFT_59065
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family MYB_related
Protein Properties Length: 445aa    MW: 48176.2 Da    PI: 10.4554
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Genemark1.1027_ggenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.3e-11351400247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqky 47 
                       +rW+ eE + l+++v+ lG+g+W++I  +       gR   ++k++w+++
  Genemark1.1027_g 351 KRWSDEERDALINGVTILGTGHWAAILDRYTtifaPGRNSVDIKDKWRNL 400
                       69**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.187345405IPR017930Myb domain
SMARTSM007172.0E-8349403IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-12351402IPR009057Homeodomain-like
CDDcd116603.69E-16351402No hitNo description
PfamPF002491.4E-8351400IPR001005SANT/Myb domain
SuperFamilySSF466896.13E-13352409IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MRTRNAVYQP TEALETETKS HEKLKAKRAK KKKMGADLLR KREAKKAAEQ AEQAELDTDT  60
TEEASASPKR GRGRPRKSLA TIAAPFRAPI TSVGPSSPGG PSLPQRPAPA SPSVRQAREP  120
PQQPTGGGSG AVRQLAAAAA RPQHVPTWGL AQDAARKKAE DAAVEVARQS GRYVDVAVHS  180
FITEIPPSRL AVPEDATINF LRRQIQYRVE ELGTHMPADA LEVQVKDTWG TLTPTTSFTA  240
TGAEKTVRSY GLVPGQQHHI WVIVVDDTAA RDQRAATAAL IDMPGAPTPW PSRLAPAAAG  300
SPVPARRFTE PAQHAVAQYQ AELSPARPAR APDAAANPAT ESPGRRRQKN KRWSDEERDA  360
LINGVTILGT GHWAAILDRY TTIFAPGRNS VDIKDKWRNL VKLAQQKREA RGGTLPREQV  420
VKILEVIHRE EHPDSEPEDA PDGA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16876KRGRGRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005651082.10.0hypothetical protein COCSUDRAFT_59065
TrEMBLI0Z7B90.0I0Z7B9_COCSC; Uncharacterized protein
STRINGXP_005651082.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP650666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.13e-07telomere repeat binding factor 3
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]