PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Genemark1.1008_g
Common NameCOCSUDRAFT_59046
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family MYB_related
Protein Properties Length: 575aa    MW: 60565.6 Da    PI: 6.1371
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Genemark1.1008_ggenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.4e-111752138
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                      r +W+  E++++ +av+++G + Wk I +++g +R+  
  Genemark1.1008_g 17 REKWSDSEHQRFTEAVEKYGRD-WKMIVEHVG-TRSVA 52
                      789*****************77.*********.**975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.09E-9853IPR009057Homeodomain-like
PROSITE profilePS5129410.6961285IPR017930Myb domain
TIGRFAMsTIGR015577.1E-81552IPR006447Myb domain, plants
SMARTSM007170.00581658IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-61651IPR009057Homeodomain-like
PfamPF002497.6E-91753IPR001005SANT/Myb domain
CDDcd001674.30E-71953No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0032922Biological Processcircadian regulation of gene expression
GO:0043966Biological Processhistone H3 acetylation
GO:0046686Biological Processresponse to cadmium ion
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MADAPPTRKP YRITKQREKW SDSEHQRFTE AVEKYGRDWK MIVEHVGTRS VAQSSLGQLR  60
DDVLPSCGGP VPVRSHAQKF FLKLEKSGQA GVVPPPRPKK RAAKPYPVQD RGEERRKSKR  120
SRSSASNSSA HSQPSQTRGA AVSPSTSPSN GRSSPRSAAT AATLPVSSRR PLRSSRATRS  180
LANAAASTKG SSQDLEGNGS NIASANESNN DHSEGPSATQ ENSGLSTGGA DLDLQFSADP  240
MSLEAPEAAP RPREKSETPD YGKLYSIVNV LFDSGGAAND EKNHKQMMEQ LEPGQRKELL  300
AMMDQLTGNL RSTCPPAQKL EQLKAELKAK SQSPTPPQQP PPTPIPAPAR ASRLDHAASM  360
PLMPCTACLP MPQTVSEEPL ALMQPLPGSQ GTALLQPLPC AQQCSFSPVL PPPLASDACE  420
LVHCGSGAGS SLGSGIGCGS VAALPGLAAD AVLLQQSEPE QSIAEQLLVD NSGEGAGMGQ  480
AMFDIQQGSG LEEVGLQLPK SSSLGGNTPL DTCLAQLESG TDPTVPESDD FLDSWKIGSS  540
DPVWQTLEMQ QLSPTAPTSP SSFTRDTNGS MFAL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00338DAPTransfer from AT3G09600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005651061.10.0hypothetical protein COCSUDRAFT_59046
TrEMBLI0Z7980.0I0Z798_COCSC; Uncharacterized protein
STRINGXP_005651061.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4541427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.11e-19MYB_related family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]