PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK29015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 163aa    MW: 18410.4 Da    PI: 10.3588
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK29015.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00016991123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++Cg  F++   L  H+r+H
  PK29015.1 69 HECSICGAEFTSGQALGGHMRRH 91
               78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.24E-66692No hitNo description
Gene3DG3DSA:3.30.160.605.0E-46791IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.8E-136893IPR007087Zinc finger, C2H2
SMARTSM003550.016991IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7236991IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
XEIKRNNNHQ LFGGLPSDDE DQTQFIKKVN NSSTALSLQL SNNNNNNNRS STNLYGSGTN  60
FVTKASKVHE CSICGAEFTS GQALGGHMRR HRAPAVSGST TTTSTALSLT TNTPPTTQFM  120
SLDHHHQQQQ QQQHQSTNLE QEQRQRQQQQ RRLHHQRQQQ QQX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022764601.14e-22zinc finger protein ZAT5-like
TrEMBLA0A2P5AGK91e-35A0A2P5AGK9_PARAD; TFIIH C1-like domain containing protein
STRINGXP_010103498.14e-19(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-15C2H2 family protein