PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK28088.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family RAV
Protein Properties Length: 353aa    MW: 39628.9 Da    PI: 6.9911
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK28088.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.72.8e-0850891054
        AP2 10 kkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                ++g W A+I+       + +r++lg+f  +e+Aa a++ a+ +l+
  PK28088.1 50 QQNGHWGAQIYA------NhQRIWLGTFKLEEDAAMAYDSAAIRLR 89
               34788****999......44**********************9986 PP

2B391.18.1e-29167267186
                EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                f+k+ltpsdv+k++rlv+pkk+a ++               g  +  ++++++ d s rsW+++++y+++s++yv+t+GW++Fvk+++Lk++D++ F+l 
  PK28088.1 167 FQKELTPSDVGKLNRLVIPKKYAIKYlphiseedseekeslGDGTVDDMEVVFHDHSMRSWKFRYCYWRSSQSYVFTRGWSRFVKEKKLKANDTIAFYLC 266
                99**************************99998876666664444599**************************************************86 PP

                S CS
         B3  86 g 86 
                +
  PK28088.1 267 E 267
                4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.30E-2142100No hitNo description
Gene3DG3DSA:3.30.730.105.0E-164398IPR001471AP2/ERF domain
PROSITE profilePS5103216.8454398IPR001471AP2/ERF domain
SMARTSM003802.8E-1843104IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-134399IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.102.6E-32164270IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-28165268IPR015300DNA-binding pseudobarrel domain
CDDcd100174.08E-26166272No hitNo description
PfamPF023623.4E-26167267IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042167287IPR003340B3 DNA binding domain
SMARTSM010198.8E-23167276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEDVMSSIVL NGGLNVIPEA ANSNGSVHSL TPSKRAKTGS SAKYKGTVKQ QNGHWGAQIY  60
ANHQRIWLGT FKLEEDAAMA YDSAAIRLRC GDSHRNFPWT KATVEEPKFQ SHYTTENLLN  120
MIKDGSYQAK FEDFLRNTCL ENSEKAASLG LLGNANIGGL LFKQLLFQKE LTPSDVGKLN  180
RLVIPKKYAI KYLPHISEED SEEKESLGDG TVDDMEVVFH DHSMRSWKFR YCYWRSSQSY  240
VFTRGWSRFV KEKKLKANDT IAFYLCEQRN VLNEKDAFAM IEVVEDNDRL LINGAAKHSC  300
LRLNFDKCCK QVEVDKEGDG EVAMEEVGNE IPKAAAAAAA ANSGFRLFGV QIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-26163266496B3 domain-containing transcription factor NGA1
5os9_B1e-26163266496B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024953690.11e-125AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_024953691.11e-125AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_024953692.11e-125AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-102RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A2P5F3D70.0A0A2P5F3D7_TREOI; AP2/ERF transcription factor
STRINGXP_006473975.11e-125(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.12e-97RAV family protein