PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK27587.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NF-YC
Protein Properties Length: 205aa    MW: 23301.3 Da    PI: 6.2391
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK27587.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.18.2e-56301331101
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdivp
  PK27587.1  30 QLRTFWANQyqeIEQSSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 129
                89******99999*************************************************************************************** PP

      NF-YC  98 rdel 101
                r++l
  PK27587.1 130 REDL 133
                *987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.87E-3320124IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.3E-3843116IPR009072Histone-fold
PfamPF008081.0E-2152115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
AGPSASPQLA QHQLAYQHIH QQQQEQLQQQ LRTFWANQYQ EIEQSSDFKN HSLPLARIKK  60
IMKADEDVRM ISAEAPVIFA RACEMFILEL TLRSWNHTEE NKRRTLQKND IAAAITRTDI  120
FDFLVDIVPR EDLKDEVLAS VPRGSLPVAG PADGVPYYYA APQVAPPGMM VGKPVMDQAV  180
YGQQQARPYM NQPTWPHQQQ PPNDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-42151303119HapE
4g92_C1e-42151303119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108RRTLQKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094005.11e-121Nuclear transcription factor Y subunit C-9
SwissprotQ8L4B22e-84NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLW9QV281e-121W9QV28_9R
STRINGPOPTR_0010s03730.11e-110(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-77nuclear factor Y, subunit C9