PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25743.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 63aa    MW: 7120.75 Da    PI: 10.6024
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25743.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-17246956
        AP2  9 dkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56
               ++ +g+++AeIrd  + ng  +r++lg+f taeeAa+a+++a+ +++g+
  PK25743.1  2 RP-WGKFAAEIRDS-NrNG--ARIWLGTFATAEEAARAYDRAAFSMRGP 46
               56.**********4.4254..*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.4E-12145IPR001471AP2/ERF domain
PROSITE profilePS5103220.192153IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-21154IPR016177DNA-binding domain
SMARTSM003801.1E-27159IPR001471AP2/ERF domain
CDDcd000181.06E-22155No hitNo description
Gene3DG3DSA:3.30.730.103.4E-27154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
RRPWGKFAAE IRDSNRNGAR IWLGTFATAE EAARAYDRAA FSMRGPFAIL NFPNDYPNLS  60
VPX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-271562075Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111910.15e-32ethylene-responsive transcription factor ERF096
SwissprotQ9LTC54e-28ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2P5CNI81e-30A0A2P5CNI8_PARAD; AP2/ERF transcription factor
TrEMBLA0A2P5E8491e-30A0A2P5E849_TREOI; AP2/ERF transcription factor
TrEMBLW9SJP61e-30W9SJP6_9ROSA; Ethylene-responsive transcription factor
STRINGXP_010111910.12e-31(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.18e-17ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]