PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family LBD
Protein Properties Length: 76aa    MW: 8196.29 Da    PI: 8.3884
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23380.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26084.71.4e-26875167
     DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAea 67
               +C aCk+lrrkC ++C++apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+a
  PK23380.1  8 PCGACKFLRRKCINGCIFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPVTDRCEAAVTISYEAQA 75
               7*************************89**************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.201776IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-24875IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
IMTGFGSPCG ACKFLRRKCI NGCIFAPYFC HEQGATHFAA IHKVFGASNV SKLLAHLPVT  60
DRCEAAVTIS YEAQAX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262268.17e-49PREDICTED: LOB domain-containing protein 29
SwissprotQ9M2J79e-42LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A072U3H88e-47A0A072U3H8_MEDTR; LOB domain protein
STRINGGLYMA13G18210.13e-45(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35713366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.15e-43lateral organ boundaries-domain 29