PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23185.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family LBD
Protein Properties Length: 106aa    MW: 11433.2 Da    PI: 6.782
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23185.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.51.9e-3259214100
     DUF260  14 kdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                ++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l++el++l+++
  PK23185.1   5 AGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTVCYEAQARLRDPVYGCVAHIFALQQQVVSLQTELSYLQAH 92 
                68*********9989********************************************************************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.361193IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-31490IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
ESAVAGCIFA PYFDSEQGAA HFAAVHKVFG ASNVSKLLLH IPVHKRLDAV VTVCYEAQAR  60
LRDPVYGCVA HIFALQQQVV SLQTELSYLQ AHLATLELPS PPPAPP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092844.17e-68hypothetical protein L484_022439
SwissprotO221313e-57LBD18_ARATH; LOB domain-containing protein 18
SwissprotO813232e-57LBD30_ARATH; LOB domain-containing protein 30
TrEMBLW9QS277e-68W9QS27_9R
STRINGBRADI1G68170.15e-60(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.12e-59LBD family protein