PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK21340.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NF-YC
Protein Properties Length: 217aa    MW: 24422.6 Da    PI: 7.0228
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK21340.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.99.8e-56461491101
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                ql++fw++q   iek++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trt ifdflvdivp
  PK21340.1  46 QLQNFWANQyqeIEKVSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTGIFDFLVDIVP 145
                89******99999*************************************************************************************** PP

      NF-YC  98 rdel 101
                r++l
  PK21340.1 146 REDL 149
                *987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.24E-3336140IPR009072Histone-fold
Gene3DG3DSA:1.10.20.109.1E-3860132IPR009072Histone-fold
PfamPF008081.2E-2168131IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
XMGGNPTPGS VGGIQSTSQP GGAQLAQHQL AYQHIHHQQQ QQLQQQLQNF WANQYQEIEK  60
VSDFKNHSLP LARIKKIMKA DEDVRMISAE APVIFARACE MFILELTLRS WNHTEENKRR  120
TLQKNDIAAA ITRTGIFDFL VDIVPREDLK DEVVASIPRG NVPVGGPADS LPYCYMPPQH  180
APPQVGTPGM IMGKPVMDLS MYAQQPHHPY MAQQMWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_C2e-4061146994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B2e-4061146994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118124RRTLQKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875193.11e-132PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_015875194.11e-132PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_015875195.11e-132PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ8L4B21e-85NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLW9T3161e-127W9T316_9R
STRINGVIT_14s0128g00250.t011e-117(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-84nuclear factor Y, subunit C9