PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20670.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 92aa    MW: 10626.4 Da    PI: 6.6828
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20670.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS32.89.4e-11490257350
       GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350
                f +++ey + +++s+++ +    + r + Er+l++ e+ + ++++g++    +e +ekW er++ aGF   +++e+a +  ++llrk++ ++++r
  PK20670.2   4 FPRKVEYLWRFLESTSSAF----KGRESEERRLMEGEAAKGLTNRGEM----NEGKEKWCERMRGAGFVGESFGEEAIDGGRALLRKYDsNWEMR 90 
                66789999*******7775....7777888888888899999999988....9***********************************9666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.2E-8490IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
XCGFPRKVEY LWRFLESTSS AFKGRESEER RLMEGEAAKG LTNRGEMNEG KEKWCERMRG  60
AGFVGESFGE EAIDGGRALL RKYDSNWEMR VX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007216829.14e-52hypothetical protein PRUPE_ppa022653mg
SwissprotQ4VYC82e-45NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLM5X9415e-52M5X941_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s16890.18e-49(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.16e-38GRAS family protein