PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17526.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 317aa    MW: 34347.6 Da    PI: 9.6702
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17526.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.2e-1499143347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
        PK17526.1  99 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 143
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.911520IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.91692148IPR017930Myb domain
SuperFamilySSF466897.48E-1794149IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-1695146IPR006447Myb domain, plants
SMARTSM007179.8E-1196146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-1198143IPR009057Homeodomain-like
CDDcd001671.93E-999144No hitNo description
PfamPF002492.0E-1199143IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSRTCSQCGN NGHNARTCTE LCGGEGGTSA APGENAIMLF GVRVTEATGS SFRKSASMTN  60
LSQFDQPPLH HDSNAEAGYA SDDIVHASGR SRERKRGTPW TEEEHKLFLL GLQKVGKGDW  120
RGISRNFVKT RTPTQVASHA QKYFLRRNNH NRRRRRSSLF DITTDTFMNP SSSMEDLTIL  180
QESPSSLPVL SHPPQPCNIG LFPMSMARPV ILPIATENSG ESTLAFESGS QGNKTAISMP  240
IRPIPLHPAV LPPPSAKMAN LNLNKSLEPS NLSLKLSGPS SSSTDEKSQS PPPQRPPQHP  300
PTNFQAMPNG DSIISVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBM25215497Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098248.11e-114Transcription factor
SwissprotQ2V9B03e-48MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLW9RHA01e-114W9RHA0_9R
STRINGVIT_01s0026g01050.t012e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53383350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.22e-77MYB_related family protein