PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15652.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family RAV
Protein Properties Length: 371aa    MW: 41007.4 Da    PI: 10.1019
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15652.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.39e-144997155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  PK15652.1 49 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 97
               89****9888.8*********3.....5**********99*************98 PP

2B3104.17.5e-33190283188
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                f+k+ tpsdv+k++rlv+pk++ae+h    ++++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gLk+gD+v+F+++ ++  
  PK15652.1 190 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSSNTSKGVLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLKAGDIVTFQRStSNgP 283
                89***************************9888899***************************************************7634444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-1749105IPR016177DNA-binding domain
CDDcd000181.18E-2649104No hitNo description
PfamPF008472.8E-94997IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-2150105IPR001471AP2/ERF domain
SMARTSM003802.3E-3050111IPR001471AP2/ERF domain
PROSITE profilePS5103220.45550105IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.1E-41184295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-30189279IPR015300DNA-binding pseudobarrel domain
CDDcd100173.31E-30189282No hitNo description
PfamPF023622.9E-30190289IPR003340B3 DNA binding domain
PROSITE profilePS5086314.508190295IPR003340B3 DNA binding domain
SMARTSM010197.0E-25190295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
XAANAAAIPP SAPKPLEKLC RLGSGASVVL DTGSSESGVE AESRKLPSSK YKGVVPQPNG  60
RWGAQIYEKH QRVWLGTFNE EDEAARAYDV AAQRFRGRDA VTNFKPLSSD TDEIEASFLS  120
SHSKAEIVDM LRKHTYNDEL EQSKRNFGAS GSPHNNRMMM MKHLLMKSSG FGSGLDDPLL  180
MKQHVREQLF EKAVTPSDVG KLNRLVIPKQ HAEKHFPLQS SNTSKGVLLN FEDGGGKVWR  240
FRYSYWNSSQ SYVLTKGWSR FVKEKGLKAG DIVTFQRSTS NGPDKQLYID WKARDNGPIV  300
GPGPVQQPKL QQHQSPPVQM LRLFGVNIFK TPGSGVVVEA GIGGGCNGKR IRDLELLELE  360
CTKKPRIIGA L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-5818730411127DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895704.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like isoform X1
RefseqXP_015895705.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like isoform X2
SwissprotQ9ZWM91e-144RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A2P5ENH50.0A0A2P5ENH5_TREOI; AP2/ERF transcription factor
STRINGXP_010093403.11e-175(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-142related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]