PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14794.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Dof
Protein Properties Length: 260aa    MW: 26635.5 Da    PI: 8.4201
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14794.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.71.3e-383595262
     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
               ++++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s
  PK14794.1 35 EQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRS 95
               57889****************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-273593IPR003851Zinc finger, Dof-type
PfamPF027012.4E-333793IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.2643993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0042545Biological Processcell wall modification
GO:0045787Biological Processpositive regulation of cell cycle
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MPSETGELCR RPPPPLKTQN SGNAGSAPPP PPPPEQEHLP CPRCDSTNTK FCYYNNYNFS  60
QPRHFCKSCR RYWTHGGTLR DIPVGGGSRK NAKRSRTTAI NSSPGLSDHH HLHHHALSAT  120
PVLLPLSANH QGGGGGGGSG LHFGDVKPNI GGLCGGSFTS LLNTQSPGFL ALGGFGLGLG  180
GGLDDLGFGI GRGIWPFPGV GDGGGAGVGV GNGNGGSALR GIGNTWQFEN GDNHGGAAFV  240
GGDFCSWAEP PISTPGNGLK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00402DAPTransfer from AT3G50410Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). {ECO:0000269|PubMed:10758484}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310762.15e-88dof zinc finger protein DOF3.4
SwissprotQ390885e-58DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBLA0A2P5FY423e-88A0A2P5FY42_TREOI; Zinc finger, Dof-type
STRINGPOPTR_0007s11790.12e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28013168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.11e-46OBF binding protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]