PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14700.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HSF
Protein Properties Length: 329aa    MW: 38417.8 Da    PI: 4.8926
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14700.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.92.5e-36101022103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sws++g+sfvv+d++ fa ++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +++k+ll++i+
     PK14700.2  10 FLTKTYDMVDDPSTNRIVSWSKDGTSFVVWDPHAFALNLLPRYFKHNNFSSFVRQLNTYGFRKIDADR---------WEFANEGFIRDQKHLLKSIR 97 
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++ +
     PK14700.2  98 RRRAS 102
                   *9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.43E-37699IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-62699IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-39699IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.5E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.9E-331099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
XLHDVGPPPF LTKTYDMVDD PSTNRIVSWS KDGTSFVVWD PHAFALNLLP RYFKHNNFSS  60
FVRQLNTYGF RKIDADRWEF ANEGFIRDQK HLLKSIRRRR ASSQPFPHEQ QALGPCVEVG  120
RFGLDAEIDR LRRDKQVLMM ELVKLRQQQQ NTRAYLQAME QRLQGTEMKQ QQMMAFLARA  180
MKNPAFLQQL LQQKERRKVI EEAMTKKRRR PIDQGPSSRS SGIETSHGSI KVEPLESSDY  240
GFEVSELEAL AFEMQGFGKL RMEQEEGDEE LEPPESGDRE LDDGFWEELF SEDAKGVEDE  300
DVNVLTDHFG CLGSSPREQE ELREEDYWW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-25810218123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18699RDQKHLLKSIRRRR
2195209RRKVIEEAMTKKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891435.11e-180PREDICTED: heat stress transcription factor A-7a-like
RefseqXP_015891434.11e-180PREDICTED: heat stress transcription factor A-7a-like
RefseqXP_015891386.11e-180PREDICTED: heat stress transcription factor A-7a-like
SwissprotQ6VBB21e-119HFA2B_ORYSJ; Heat stress transcription factor A-2b
SwissprotQ9LUH81e-119HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLW9QXL81e-175W9QXL8_9R
STRINGPOPTR_0005s23640.11e-164(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-111heat shock transcription factor A6B